Servers

Please check the news section for updates on the availability of our web tools.

DD-NMA

DD-NMA provides tools for calculating Normal Modes using either Full-atomic or Coarse-Grained Models of Proteins and Nucleic Acids.

MinActionPath

MinActionPath provides tools for Calculating the most-probable trajectory between two known structural states of a protein.

NOMAD-Ref provides tools for calculating functionally relevant movements in biological macromolecules, for investigating different conformations of large protein structures, for modeling receptor/ligand docking complexes, and for calculating the associated molecular motions.

PDB_HYDRO

PDB_HYDRO provides tools for mutating and solvating structures of biological macromolecules like proteins or DNA. It identifies strongly and poorly solvated exposed surfaces of structures in an effort to help identify potential interaction zones.

Note: Replaced by AquaSol

AquaSol

AquaSol calculates the water density around a macromolecule.

Note: Superseeds PDB_HYDRO

AquaSAXS

AquaSAXS provides tools for computation of and fitting of SAXS profiles with non-uniformally hydrated atomic models.